PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5375_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 271aa    MW: 31144.7 Da    PI: 9.0164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5375_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041104127123
                                          EEETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                          ++C++C+k F+   +L +H  + H
  cra_locus_5375_iso_4_len_1320_ver_3 104 WRCGYCKKIFRAEKYLDQHFDNrH 127
                                          58*****************77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
XFILLLVVLS LPVSVYSISS LSQSNLQGTE HPNSRSLKQE DPHVHEVHCS RERSRAAWKV  60
IEEYLMPFVE KEKYQISPQC RLHPSNDLFR DQEEHKIHVD VNEWRCGYCK KIFRAEKYLD  120
QHFDNRHYNL LNANNGKCLA EVCGALHCDL MMDSAPRKSK CNPAAATKNR HLCESLADSC  180
FPVNQGPSAA HLHDFFLRQF CDSHTCSGGK KPFSKGGKKH TSVLYLAASV LILMLLPIFY  240
LLVYLYQREM QKGTQELKRI PKLGRRKTKP S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084024.11e-146PREDICTED: uncharacterized protein LOC105166382 isoform X1
TrEMBLA0A068V3A71e-160A0A068V3A7_COFCA; Uncharacterized protein
STRINGSolyc03g111370.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216